Downloads

CONTENTS

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GPMAW
A short description of the GPMAW program and a small FAQ.

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Help
Help for running GPMAW in the form of pdf and online documents.

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Upgrade
Get the most recent upgrades to GPMAW here. A number of other downloads are available.

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References Describes reviews and scientific articles using GPMAW

Upgrades of GPMAW
Your license of GPMAW entitles you to free upgrades for one year after purchase.
If you are in doubt about the validity of your license, you may contact Lighthouse data on
php@bmb.sdu.dk for details (remember to include your license number). If you need additional licenses or buy an upgrade please check the Pricing information.

Upgrades of GPMAW:
Please see How to upgrade GPMAW for information.

Version 8.00 (~13 MB)
Released on December 9, 2007.
As this release contains a number of new files, the upgrade is a complete install without databases and license files. Please
check here for more details.

Version 7.10 (~7 MB)
Released on January 26, 2007.
July 5: Service release 2. Entrez retrieval fixed. In addition you can get a charge table in the pH/charge graph.

Version 7.02 (~7 MB)
Released on September 22, 2006. Changes can be found here. No Newsletter is available this time..

Version 7.01 (~6.9 MB)
Released on February, 2006. Changes can be found here. As this is a minor upgrade there is no Newsletter. August 2006: The version has been modified as context-sensitive help was disabled.
In addition mass input for searching has been expanded to 4 decimals.

Version 7.00 (~6.9 MB).
Released on December 13, 2005. You will need a previous installation and a license more recent than July 2004 in order to make the program fully functional. The Newsletter probably gives you more information than you want to know about the new version.

Version 6.21 (~4.85 MB)
Released on March 9, 2005. Changes can be found here, but more details are in the on-line help. As this is a minor upgrade there is no Newsletter.

Version 6.20 (~4.85 MB)
Released on December 17, 2004. Information on changs can be found in the on-line help, in the Newsletter.
Note: Several users have experienced problems with mass search including modifications - this has been corrected in the present download. The timestamp is similar to the original file, so all users of v. 6.20 should be able to use the corrected version.

 Version 6.10/6.11 (~4.8 MB)
Released on April 2, 2004. Information on changs can be found in the on-line help, the Newsletter and the version changes
Note: This link now downloads version 6.11 which fixes two problems: selection of sequences for dot-plot and retrieval of proteins from a list of accession numbers (May 2004).

Version 6.01 (~4.6 MB)
Released on October, 2003. Information on changes can be found in the on-line help, the newsletter and the detailed version changes.

Version 6.00 (~4.4 MB)
Released on May 28, 2003. Information on changes can be found in the on-line help, the newsletter and the detailed version changes.

Version 5.11 (~4.3 MB)
Released on December 11, 2002. As it is mainly error corrections, it has been "backdated" to September. As such all licenses after Aprill 2001 should be upgradeable. NOTE: due to a change in compiler, a number of errors have surfaced, which has resulted in a new version of 5.11 was posted on December 17th.

Version 5.10 (~4.3 MB).
Released on September 26, 2002. You will need a previous installation and a license more recent than April 2001 in order to make the program fully functional.

Version 5.02 (~4.7 MB).
Released on March 25, 2002. You will need a previous installation and a licence later than September 2000 in order to make the program function.

Version 5.01 (~4.7 MB).
 (needs a previous installation and a license later than May 2000 in order to function).

Version 4.23 (~3.9 MB).
If your license is not valid for version 5.01, you may try this one.

For newsletters on the various versions, please check the Help section.

 

Other downloads:

Demo version of GPMAW (~4.8 MB)
Download and execute the "gpmaw60D.exe" file. This will install the demo version of GPMAW. It is a fully functional version, but will only run 20 times (note the counter during upstart counts down in hexadecimal mode).

Beta version of GPMAW.
It is now possible for the end user to test new versions of GPMAW before they are released. These versions will contain new features and error corrections, but the changes are in most cases not documentet.
Please check the
Beta version page.

DBindexer has been updated to v. 1.21. A new quick conversion routine has been implemented. Four quick steps converts and indexes your databases for GPMAW.
1. Select database type.
2. Specify database location.
3. Set options.
4. Press the `GoŽ button.
Furthermore, you can now filter a FastA database based on a list of accession numbers. This will generate a new database with the listed sequences (also in FastA format).
To download press here:
DBindex utility. New version of Mar. 2004. Can now handle the IPI database.
DBindex help file.
Copy both files to the same directory (if using GPMAW it should be the \gpmaw\bin\ directory) and make a link from the DBindex.exe file to your desktop. Alternatively you can call it from GPMAW.

Small freeware programs:

PeakErazor. If you are doing manual peptide mass searches you should test out the PeakErazor software for doing multipoint calibration and junk peak removal.

Full GPMAW download:

The full version of GPMAW (version 7.10) can be downloaded here. For version 8.00 you can download the upgrade version.
Notice: Without a valid license, this version will run in demo mode!

F r a g m e n t analyzer. This is an independent program that, if placed in the \gpmaw\bin\ directory will be recognized by GPMAW and when called from GPMAW it will transfer the current mass file. If called in standalone mode, only the standard mass file can be used. For details, please see the manual.

ProteinXXX. This is the cross-linking function as found in GPMAW v. 7.10 but available as an independently running program (freeware).

MSFileConv. This is a small mass file convertion utility. Converts between mgm, pkx, pkl, and msm file formats. Also generates gpm files for GPMAW / ProteinXXX.

UniMod:

If you have deleted your copy of UniMod.xml by accident, a working copy can be downloaded here.
 

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